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1

Half-space mass: a maximally robust and efficient data depth method

Chen, Bo, Ting, Kai Ming, Washio, Takashi, Haffari, Gholamreza

Journal:

Machine Learning

Year:

2015

Language:

english

File:

PDF, 1.92 MB

english, 2015

2

A proximal point algorithm for generalized fractional programs

Addoune, S., El Haffari, M., Roubi, A.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.92 MB

english, 2017

3

PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework

Song, Jiangning, Li, Fuyi, Takemoto, Kazuhiro, Haffari, Gholamreza, Akutsu, Tatsuya, Chou, Kuo-Chen, Webb, Geoffrey I.

Journal:

Journal of Theoretical Biology

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

4

Fast, Small and Exact: Infinite-order Language Modelling with Compressed Suffix Trees

Shareghi, Ehsan, Petri, Matthias, Haffari, Gholamreza, Cohn, Trevor

Journal:

Transactions of the Association for Computational Linguistics

Year:

2016

File:

PDF, 969 KB

2016

5

Semi-supervised model adaptation for statistical machine translation

Nicola Ueffing, Gholamreza Haffari, Anoop Sarkar

Journal:

Machine Translation

Year:

2007

Language:

english

File:

PDF, 209 KB

english, 2007

6

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

Shah, Sohrab P., Roth, Andrew, Goya, Rodrigo, Oloumi, Arusha, Ha, Gavin, Zhao, Yongjun, Turashvili, Gulisa, Ding, Jiarui, Tse, Kane, Haffari, Gholamreza, Bashashati, Ali, Prentice, Leah M., Khattra, J

Journal:

Year:

2012

Language:

english

File:

PDF, 682 KB

english, 2012

7

Scoring relevancy of features based on combinatorial analysis of Lasso with application to lymphoma diagnosis

Habil Zare, Gholamreza Haffari, Arvind Gupta, Ryan R Brinkman

Journal:

Year:

2013

Language:

english

File:

PDF, 592 KB

english, 2013

8

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

Ali Bashashati, Gholamreza Haffari, Jiarui Ding, Gavin Ha, Kenneth Lui…

Journal:

Year:

2012

Language:

english

File:

PDF, 1.02 MB

english, 2012

9

[IEEE 2010 IEEE International Conference on Data Mining Workshops (ICDMW) - Sydney, TBD, Australia (2010.12.13-2010.12.13)] 2010 IEEE International Conference on Data Mining Workshops - Modeling the Temporal Dynamics of Social Rating Networks Using Bidirectional Effects of Social Relations and Rating Patterns

Jamali, Mohsen, Haffari, Gholamreza, Ester, Martin

Year:

2010

Language:

english

File:

PDF, 758 KB

english, 2010

10

An Efficient Algorithm for Upper Bound on the Partition Function of Nucleic Acids

Chitsaz, Hamidreza, Forouzmand, Elmirasadat, Haffari, Gholamreza

Journal:

Journal of Computational Biology

Year:

2013

Language:

english

File:

PDF, 436 KB

english, 2013

11

Automated Analysis of Multidimensional Flow Cytometry Data Improves Diagnostic Accuracy Between Mantle Cell Lymphoma and Small Lymphocytic Lymphoma

Zare, H., Bashashati, A., Kridel, R., Aghaeepour, N., Haffari, G., Connors, J. M., Gascoyne, R. D., Gupta, A., Brinkman, R. R., Weng, A. P.

Journal:

American Journal of Clinical Pathology

Year:

2012

Language:

english

File:

PDF, 457 KB

english, 2012

12

[IEEE 2015 International Conference on Biometrics (ICB) - Phuket, Thailand (2015.5.19-2015.5.22)] 2015 International Conference on Biometrics (ICB) - Predicting segmentation errors in an iris recognition system

Mahadeo, Nitin K., Haffari, Gholamreza, Paplinski, Andrew P.

Year:

2015

Language:

english

File:

PDF, 310 KB

english, 2015

13

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data

Ding, J., Bashashati, A., Roth, A., Oloumi, A., Tse, K., Zeng, T., Haffari, G., Hirst, M., Marra, M. A., Condon, A., Aparicio, S., Shah, S. P.

Journal:

Year:

2012

Language:

english

File:

PDF, 381 KB

english, 2012

14

[ACM Press the 20th international conference - Hyderabad, India (2011.03.28-2011.04.01)] Proceedings of the 20th international conference on World wide web - WWW '11 - Modeling the temporal dynamics of social rating networks using bidirectional effects of social relations and rating patterns

Jamali, Mohsen, Haffari, Gholamreza, Ester, Martin

Year:

2011

Language:

english

File:

PDF, 789 KB

english, 2011

15

[ACM Press the 25th international conference - Helsinki, Finland (2008.07.05-2008.07.09)] Proceedings of the 25th international conference on Machine learning - ICML '08 - Boosting with incomplete information

Haffari, Gholamreza, Wang, Yang, Wang, Shaojun, Mori, Greg, Jiao, Feng

Year:

2008

Language:

english

File:

PDF, 610 KB

english, 2008

16

[IEEE 2014 IEEE International Conference on Data Mining (ICDM) - Shenzhen, China (2014.12.14-2014.12.17)] 2014 IEEE International Conference on Data Mining - Mp-Dissimilarity: A Data Dependent Dissimilarity Measure

Aryal, Sunil, Ting, Kai Ming, Haffari, Gholamreza, Washio, Takashi

Year:

2014

Language:

english

File:

PDF, 271 KB

english, 2014

17

Semi-Supervised Model Adaptation for Statistical Machine Translation

Nicola Ueffing, Gholamreza Haffari and Anoop Sarkar

Journal:

Machine Translation

Year:

2007

Language:

english

File:

PDF, 2.05 MB

english, 2007

18

Text mining electronic hospital records to automatically classify admissions against disease: Measuring the impact of linking data sources

Kocbek, Simon, Cavedon, Lawrence, Martinez, David, Bain, Christopher, Manus, Chris Mac, Haffari, Gholamreza, Zukerman, Ingrid, Verspoor, Karin

Journal:

Journal of Biomedical Informatics

Year:

2016

Language:

english

File:

PDF, 452 KB

english, 2016

19

Multi-domain evaluation framework for named entity recognition tools

Abdallaha, Zahraa S., Carmana, Mark, Haffari, Gholamreza

Journal:

Computer Speech & Language

Year:

2016

Language:

english

File:

PDF, 3.91 MB

english, 2016

20

Data-dependent dissimilarity measure: an effective alternative to geometric distance measures

Aryal, Sunil, Ting, Kai Ming, Washio, Takashi, Haffari, Gholamreza

Journal:

Knowledge and Information Systems

Year:

2017

Language:

english

File:

PDF, 1.91 MB

english, 2017

21

HIT'nDRIVE: Patient-specific multi-driver gene prioritization for precision oncology

Shrestha, Raunak, Hodzic, Ermin, Sauerwald, Thomas, Dao, Phuong, Wang, Kendric, Yeung, Jake, Anderson, Shawn, Vandin, Fabio, Haffari, Gholamreza, Collins, Colin C, Sahinalp, Cenk

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 2.77 MB

english, 2017

22

HetFHMM: A Novel Approach to Infer Tumor Heterogeneity Using Factorial Hidden Markov Models

Rahman, Mohammad S., Nicholson, Ann E., Haffari, Gholamreza

Journal:

Journal of Computational Biology

Year:

2017

Language:

english

File:

PDF, 403 KB

english, 2017

23

PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy

Song, Jiangning, Li, Fuyi, Leier, André, Marquez-Lago, Tatiana T, Akutsu, Tatsuya, Haffari, Gholamreza, Chou, Kuo-Chen, Webb, Geoffrey I, Pike, Robert N

Journal:

Year:

2017

Language:

english

File:

PDF, 457 KB

english, 2017

24

Convergence of a proximal algorithm for solving the dual of a generalized fractional program

El Haffari, Mostafa, Roubi, Ahmed

Journal:

RAIRO - Operations Research

Year:

2017

Language:

english

File:

PDF, 254 KB

english, 2017

25

Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods

Li, Fuyi, Wang, Yanan, Li, Chen, Marquez-Lago, Tatiana T, Leier, André, Rawlings, Neil D, Haffari, Gholamreza, Revote, Jerico, Akutsu, Tatsuya, Chou, Kuo-Chen, Purcell, Anthony W, Pike, Robert N, Webb

Journal:

Briefings in Bioinformatics

Year:

2018

Language:

english

File:

PDF, 13.91 MB

english, 2018

26

[ACM Press the ACM India Joint International Conference - Kolkata, India (2019.01.03-2019.01.05)] Proceedings of the ACM India Joint International Conference on Data Science and Management of Data - CoDS-COMAD '19 - Cognate Identification to improve Phylogenetic trees for Indian Languages

Kanojia, Diptesh, Kulkarni, Malhar, Bhattacharyya, Pushpak, Haffari, Gholemreza

Year:

2019

File:

PDF, 414 KB

2019

27

[IEEE 2018 IEEE 5th International Congress on Information Science and Technology (CiSt) - Marrakech, Morocco (2018.10.21-2018.10.27)] 2018 IEEE 5th International Congress on Information Science and Technology (CiSt) - Statistical Machine Translation for Bilingually Low-Resource Scenarios: A Round-Tripping Approach

Ahmadnia, Benyamin, Haffari, Gholamreza, Serrano, Javier

Year:

2018

Language:

english

File:

PDF, 112 KB

english, 2018

28

[IEEE 2018 17th IEEE International Conference on Machine Learning and Applications (ICMLA) - Orlando, FL (2018.12.17-2018.12.20)] 2018 17th IEEE International Conference on Machine Learning and Applications (ICMLA) - Neural Machine Translation Advised by Statistical Machine Translation: The Case of Farsi-Spanish Bilingually Low-Resource Scenario

Ahmadnia, Benyamin, Kordjamshidi, Parisa, Haffari, Gholamreza

Year:

2018

File:

PDF, 100 KB

2018

29

[IEEE 2018 17th IEEE International Conference on Machine Learning and Applications (ICMLA) - Orlando, FL (2018.12.17-2018.12.20)] 2018 17th IEEE International Conference on Machine Learning and Applications (ICMLA) - Neural Machine Translation Advised by Statistical Machine Translation: The Case of Farsi-Spanish Bilingually Low-Resource Scenario

Ahmadnia, Benyamin, Kordjamshidi, Parisa, Haffari, Gholamreza

Year:

2018

Language:

english

File:

PDF, 100 KB

english, 2018

30

Melphalan modifies the bone microenvironment by enhancing osteoclast formation

Chai, Ryan C., McDonald, Michelle M., Terry, Rachael L., Kovačić, Nataša, Down, Jenny M., Pettitt, Jessica A., Mohanty, Sindhu T., Shah, Shruti, Haffari, Gholamreza, Xu, Jiake, Gillespie, Matthew T.,

Journal:

Year:

2017

Language:

english

File:

PDF, 10.07 MB

english, 2017

31

Closing the Gap in Surveillance and Audit of Invasive Mold Diseases for Antifungal Stewardship Using Machine Learning

Baggio, Diva, Peel, Trisha, Peleg, Anton Y., Avery, Sharon, Prayaga, Madhurima, Foo, Michelle, Haffari, Gholamreza, Liu, Ming, Bergmeir, Christoph, Ananda-Rajah, Michelle

Journal:

Journal of Clinical Medicine

Year:

2019

Language:

english

File:

PDF, 1.37 MB

english, 2019

32

An Interpretable Algorithm on Post-injury Health Service Utilization Patterns to Predict Injury Outcomes

Akbarzadeh Khorshidi, Hadi, Hassani-Mahmooei, Behrooz, Haffari, Gholamreza

Journal:

Journal of Occupational Rehabilitation

Year:

2019

File:

PDF, 980 KB

2019

33

A comparative study of data-dependent approaches without learning in measuring similarities of data objects

Aryal, Sunil, Ting, Kai Ming, Washio, Takashi, Haffari, Gholamreza

Journal:

Data Mining and Knowledge Discovery

Year:

2019

Language:

english

File:

PDF, 1.67 MB

english, 2019

34

A Statistically Efficient and Scalable Method for Exploratory Analysis of High-Dimensional Data

Rahman, Mohammad S., Haffari, Gholamreza

Journal:

SN Computer Science

Year:

2020

File:

PDF, 1.93 MB

2020

35

Inferring Two-Level Hierarchical Gaussian Graphical Models to Discover Shared and Context-Specific Conditional Dependencies from High-Dimensional Heterogeneous Data

Rahman, Mohammad S., Nicholson, Ann E., Haffari, Gholamreza

Journal:

SN Computer Science

Year:

2020

File:

PDF, 2.18 MB

2020

36

Optimality Conditions and a Method of Centers for Minimax Fractional Programs with Difference of Convex Functions

Boufi, Karima, El Haffari, Mostafa, Roubi, Ahmed

Journal:

Journal of Optimization Theory and Applications

Year:

2020

File:

PDF, 396 KB

2020

37

Reinforcement Learning Based Meta-Path Discovery in Large-Scale Heterogeneous Information Networks

Wan, Guojia, Du, Bo, Pan, Shirui, Haffari, Gholameza

Journal:

Proceedings of the AAAI Conference on Artificial Intelligence

Year:

2020

File:

PDF, 957 KB

2020

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